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Name | Description |
---|---|
a4Core | Automated Affymetrix Array Analysis Core Package |
a4Preproc | Automated Affymetrix Array Analysis Preprocessing Package |
abind | Combine Multidimensional Arrays |
acepack | ACE and AVAS for Selecting Multiple Regression Transformations |
adabag | Applies Multiclass AdaBoost.M1 |
adagio | Discrete and Global Optimization Routines |
ade4 | Analysis of Ecological Data: Exploratory and Euclidean Methods in Environmental Sciences |
adegenet | Exploratory Analysis of Genetic and Genomic Data |
AdhereR | Adherence to Medications |
adnuts | No-U-Turn MCMC Sampling for 'ADMB' and 'TMB' Models |
affxparser | Affymetrix File Parsing SDK |
affy | Methods for Affymetrix Oligonucleotide Arrays |
affyio | Tools for parsing Affymetrix data files |
affyPLM | Methods for fitting probe-level models |
AGHmatrix | Relationship matrices for diploid and autopolyploid species |
agricolae | Statistical Procedures for Agricultural Research |
akima | Interpolation of Irregularly and Regularly Spaced Data |
ALDEx2 | Analysis Of Differential Abundance Taking Sample Variation Into Account |
AlgDesign | Algorithmic Experimental Design |
amap | Another Multidimensional Analysis Package |
Amelia | A Program for Missing Data |
animation | A Gallery of Animations in Statistics and Utilities to Create Animations |
annaffy | Annotation tools for Affymetrix biological metadata |
annotate | Annotation for microarrays |
AnnotationDbi | Annotation Database Interface |
AnnotationFilter | Facilities for Filtering Bioconductor Annotation Resources |
AnnotationHub | Client to access AnnotationHub resources |
annotSnpStats | Annotated SnpMatrix objects |
apcluster | Affinity Propagation Clustering |
ape | Analyses of Phylogenetics and Evolution |
arm | Data Analysis Using Regression and Multilevel/Hierarchical Models |
aroma.light | Light-Weight Methods for Normalization and Visualization of Microarray Data using Only Basic R Data Types |
arrayQualityMetrics | Quality metrics report for microarray data sets |
assertive | Readable Check Functions to Ensure Code Integrity |
assertive.base | A Lightweight Core of the 'assertive' Package |
assertive.code | Assertions to Check Properties of Code |
assertive.data | Assertions to Check Properties of Data |
assertive.data.uk | Assertions to Check Properties of Strings |
assertive.data.us | Assertions to Check Properties of Strings |
assertive.datetimes | Assertions to Check Properties of Dates and Times |
assertive.files | Assertions to Check Properties of Files |
assertive.matrices | Assertions to Check Properties of Matrices |
assertive.models | Assertions to Check Properties of Models |
assertive.numbers | Assertions to Check Properties of Numbers |
assertive.properties | Assertions to Check Properties of Variables |
assertive.reflection | Assertions for Checking the State of R |
assertive.sets | Assertions to Check Properties of Sets |
assertive.strings | Assertions to Check Properties of Strings |
assertive.types | Assertions to Check Types of Variables |
assertthat | Easy Pre and Post Assertions |
automap | Automatic interpolation package |
backports | Reimplementations of Functions Introduced Since R-3.0.0 |
ballgown | Flexible |
BAMMtools | Analysis and Visualization of Macroevolutionary Dynamics on Phylogenetic Trees |
base64 | Base64 Encoder and Decoder |
base64enc | Tools for base64 encoding |
baseline | Baseline Correction of Spectra |
bayesm | Bayesian Inference for Marketing/Micro-Econometrics |
bayesplot | Plotting for Bayesian Models |
bazar | Miscellaneous Basic Functions |
BB | Solving and Optimizing Large-Scale Nonlinear Systems |
bbmle | Tools for General Maximum Likelihood Estimation |
bdsmatrix | Routines for Block Diagonal Symmetric Matrices |
beadarray | Quality assessment and low-level analysis for Illumina BeadArray data |
BeadDataPackR | Compression of Illumina BeadArray data |
beanplot | Visualization via Beanplots (like Boxplot/Stripchart/Violin Plot) |
BEDMatrix | Extract Genotypes from a PLINK .bed File |
bestglm | Best Subset GLM and Regression Utilities |
BGData | A Suite of Packages for Analysis of Big Genomic Data |
BGLR | Bayesian Generalized Linear Regression |
BH | Boost C++ Header Files |
BiasedUrn | Biased Urn Model Distributions |
bibtex | Bibtex Parser |
biganalytics | Utilities for 'big.matrix' Objects from Package 'bigmemory' |
big.char | Provides Very Large Vectors of Character Strings |
big.data.frame | Extend big.char and bigmemory's big.matrix to support larger-than-RAM data.frame-like objects in R. |
biglm | bounded memory linear and generalized linear models |
bigmemory | Manage Massive Matrices with Shared Memory and Memory-Mapped Files |
bigmemory.sri | A shared resource interface for Bigmemory Project packages |
BigVAR | Dimension Reduction Methods for Multivariate Time Series |
bindr | Parametrized Active Bindings |
bindrcpp | An 'Rcpp' Interface to Active Bindings |
Biobase | Biobase: Base functions for Bioconductor |
BiocGenerics | S4 generic functions for Bioconductor |
BiocInstaller | Install/Update Bioconductor |
BiocParallel | Bioconductor facilities for parallel evaluation |
BioGeoBEARS | BioGeography with Bayesian (and Likelihood) Evolutionary Analysis in R Scripts |
biomaRt | Interface to BioMart databases (e.g. Ensembl |
biomformat | An interface package for the BIOM file format |
Biostrings | Efficient manipulation of biological strings |
biovizBase | Basic graphic utilities for visualization of genomic data. |
bipartite | Visualising Bipartite Networks and Calculating Some (Ecological) Indices |
bit | A Class for Vectors of 1-Bit Booleans |
bit64 | A S3 Class for Vectors of 64bit Integers |
bitops | Bitwise Operations |
blob | A Simple S3 Class for Representing Vectors of Binary Data ('BLOBS') |
blockmodeling | Generalized and Classical Blockmodeling of Valued Networks |
bold | Interface to Bold Systems API |
Boom | Bayesian Object Oriented Modeling |
BoomSpikeSlab | MCMC for Spike and Slab Regression |
boot | Bootstrap Functions (Originally by Angelo Canty for S) |
brew | Templating Framework for Report Generation |
broom | Convert Statistical Analysis Objects into Tidy Data Frames |
BSgenome | Software infrastructure for efficient representation of full genomes and their SNPs |
BSgenome.Hsapiens.UCSC.hg19 | Full genome sequences for Homo sapiens (UCSC version hg19) |
bsts | Bayesian Structural Time Series |
bumphunter | Bump Hunter |
BurStFin | Burns Statistics Financial |
Cairo | R graphics device using cairo graphics library for creating high-quality bitmap (PNG |
calibrate | Calibration of Scatterplot and Biplot Axes |
callr | Call R from R |
CAMERA | Collection of annotation related methods for mass spectrometry data |
car | Companion to Applied Regression |
carData | Companion to Applied Regression Data Sets |
caret | Classification and Regression Training |
caTools | Tools: moving window statistics |
CCA | Canonical correlation analysis |
cccrm | Concordance Correlation Coefficient for Repeated (and Non-Repeated) Measures |
ccdrAlgorithm | CCDr Algorithm for Learning Sparse Gaussian Bayesian Networks |
cellranger | Translate Spreadsheet Cell Ranges to Rows and Columns |
checkmate | Fast and Versatile Argument Checks |
ChemoSpec | Exploratory Chemometrics for Spectroscopy |
chopsticks | The snp.matrix and X.snp.matrix classes |
chron | Chronological Objects which can Handle Dates and Times |
circlize | Circular Visualization |
cladoRcpp | C++ implementations of phylogenetic cladogenesis calculations |
class | Functions for Classification |
classInt | Choose Univariate Class Intervals |
cleangeo | Cleaning Geometries from Spatial Objects |
cli | Helpers for Developing Command Line Interfaces |
clipr | Read and Write from the System Clipboard |
clue | Cluster Ensembles |
cluster | Finding Groups in Data: Cluster Analysis Extended Rousseeuw et al. |
clusterGeneration | Random Cluster Generation (with Specified Degree of Separation) |
clusterProfiler | statistical analysis and visualization of functional profiles for genes and gene clusters |
cnv | Detection of Copy Number Variation by Sequencing |
coda | Output Analysis and Diagnostics for MCMC |
codetools | Code Analysis Tools for R |
coin | Conditional Inference Procedures in a Permutation Test Framework |
colorspace | Color Space Manipulation |
colourpicker | A Colour Picker Tool for Shiny and for Selecting Colours in Plots |
combinat | combinatorics utilities |
commonmark | High Performance CommonMark and Github Markdown Rendering in R |
compare | Comparing Objects for Differences |
ComplexHeatmap | Making Complex Heatmaps |
compositions | Compositional Data Analysis |
CompRandFld | Composite-Likelihood Based Analysis of Random Fields |
concaveman | A Very Fast 2D Concave Hull Algorithm |
CondReg | Condition Number Regularized Covariance Estimation |
config | Manage Environment Specific Configuration Values |
corpcor | Efficient Estimation of Covariance and (Partial) Correlation |
covr | Test Coverage for Packages |
cowplot | Streamlined Plot Theme and Plot Annotations for 'ggplot2' |
CpGassoc | Association Between Methylation and a Phenotype of Interest |
crayon | Colored Terminal Output |
crch | Censored Regression with Conditional Heteroscedasticity |
crmn | CCMN and other noRMalizatioN methods for metabolomics data |
crochet | Implementation Helper for [ and [<- Of Custom Matrix-Like Types |
crosstalk | Inter-Widget Interactivity for HTML Widgets |
crul | HTTP Client |
cubature | Adaptive Multivariate Integration over Hypercubes |
curl | A Modern and Flexible Web Client for R |
CVST | Fast Cross-Validation via Sequential Testing |
cvTools | Cross-validation tools for regression models |
dagitty | Graphical Analysis of Structural Causal Models |
DASTool | DAS Tool - Dereplication Aggregation and Scoring Tool for genome-resolved metagenomics |
DatABEL | File-Based Access to Large Matrices Stored on HDD in Binary Format |
data.table | Extension of `data.frame` |
date | Functions for Handling Dates |
DBI | R Database Interface |
dbplyr | A 'dplyr' Back End for Databases |
dcurver | Utility Functions for Davidian Curves |
ddalpha | Depth-Based Classification and Calculation of Data Depth |
debugme | Debug R Packages |
DelayedArray | Delayed operations on array-like objects |
deldir | Delaunay Triangulation and Dirichlet (Voronoi) Tessellation |
denstrip | Density Strips and Other Methods for Compactly Illustrating Distributions |
DEoptimR | Differential Evolution Optimization in Pure R |
depmixS4 | Dependent Mixture Models - Hidden Markov Models of GLMs and Other Distributions in S4 |
Deriv | Symbolic Differentiation |
desc | Manipulate DESCRIPTION Files |
DESeq | Differential gene expression analysis based on the negative binomial distribution |
DESeq2 | Differential gene expression analysis based on the negative binomial distribution |
deSolve | Solvers for Initial Value Problems of Differential Equations ('ODE' |
devtools | Tools to Make Developing R Packages Easier |
dfoptim | Derivative-Free Optimization |
dichromat | Color Schemes for Dichromats |
diffusionMap | Diffusion map |
digest | Create Compact Hash Digests of R Objects |
dimRed | A Framework for Dimensionality Reduction |
diptest | Hartigan's Dip Test Statistic for Unimodality - Corrected |
discretecdAlgorithm | Coordinate-Descent Algorithm for Learning Sparse Discrete Bayesian Networks |
dismo | Species Distribution Modeling |
diversitree | Comparative 'Phylogenetic' Analyses of Diversification |
dlm | Bayesian and Likelihood Analysis of Dynamic Linear Models |
doBy | Groupwise Statistics |
DO.db | A set of annotation maps describing the entire Disease Ontology |
doMC | Foreach Parallel Adaptor for 'parallel' |
doParallel | Foreach Parallel Adaptor for the 'parallel' Package |
doRNG | Generic Reproducible Parallel Backend for 'foreach' Loops |
DOSE | Disease Ontology Semantic and Enrichment analysis |
doSNOW | Foreach Parallel Adaptor for the 'snow' Package |
dotCall64 | Enhanced Foreign Function Interface Supporting Long Vectors |
dplyr | A Grammar of Data Manipulation |
DRR | Dimensionality Reduction via Regression |
DT | A Wrapper of the JavaScript Library 'DataTables' |
dtw | Dynamic Time Warping Algorithms |
dupRadar | Assessment of duplication rates in RNA-Seq datasets |
dygraphs | Interface to 'Dygraphs' Interactive Time Series Charting Library |
dynamicTreeCut | Methods for Detection of Clusters in Hierarchical Clustering Dendrograms |
e1071 | Misc Functions of the Department of Statistics |
earth | Multivariate Adaptive Regression Splines |
EbayesThresh | Empirical Bayes Thresholding and Related Methods |
EBImage | Image processing and analysis toolbox for R |
EBSeq | An R package for gene and isoform differential expression analysis of RNA-seq data |
edgeR | Empirical Analysis of Digital Gene Expression Data in R |
eDNAoccupancy | Multi-scale Occupancy Modeling of Environmental DNA Data |
egg | Extensions for 'ggplot2': Custom Geom |
ellipse | Functions for Drawing Ellipses and Ellipse-Like Confidence Regions |
emdbook | Support Functions and Data for "Ecological Models and Data" |
emulator | Bayesian Emulation of Computer Programs |
energy | E-Statistics: Multivariate Inference via the Energy of Data |
EnsDb.Hsapiens.v75 | Ensembl based annotation package |
ensembldb | Utilities to create and use Ensembl-based annotation databases |
equateIRT | IRT Equating Methods |
estimability | Tools for Assessing Estimability of Linear Predictions |
EthSEQ | Ethnicity Annotation from Whole Exome Sequencing Data |
evaluate | Parsing and Evaluation Tools that Provide More Details than the Default |
evd | Functions for Extreme Value Distributions |
expm | Matrix Exponential |
fastAdaboost | a Fast Implementation of Adaboost |
fastcluster | Fast Hierarchical Clustering Routines for R and 'Python' |
fastICA | FastICA Algorithms to Perform ICA and Projection Pursuit |
fastmatch | Fast match() function |
fastseg | fastseg - a fast segmentation algorithm |
fBasics | Rmetrics - Markets and Basic Statistics |
FD | Measuring functional diversity (FD) from multiple traits |
fda | Functional Data Analysis |
FDb.InfiniumMethylation.hg19 | Annotation package for Illumina Infinium DNA methylation probes |
fdth | Frequency Distribution Tables |
ff | Memory-Efficient Storage of Large Data on Disk and Fast Access Functions |
fftwtools | Wrapper for 'FFTW3' Includes: One-Dimensional Univariate |
fGarch | Rmetrics - Autoregressive Conditional Heteroskedastic Modelling |
FGN | Fractional Gaussian Noise and power law decay time series model fitting |
fgsea | Fast Gene Set Enrichment Analysis |
fields | Tools for Spatial Data |
FinTS | Companion to Tsay (2005) Analysis of Financial Time Series |
fitdistrplus | Help to Fit of a Parametric Distribution to Non-Censored or Censored Data |
fit.models | Compare Fitted Models |
flare | Family of Lasso Regression |
flexmix | Flexible Mixture Modeling |
FNN | Fast Nearest Neighbor Search Algorithms and Applications |
forcats | Tools for Working with Categorical Variables (Factors) |
foreach | Provides Foreach Looping Construct for R |
forecast | Forecasting Functions for Time Series and Linear Models |
foreign | Read Data Stored by 'Minitab' |
formatR | Format R Code Automatically |
Formula | Extended Model Formulas |
fpc | Flexible Procedures for Clustering |
fracdiff | Fractionally differenced ARIMA aka ARFIMA(p |
fst | Lightning Fast Serialization of Data Frames for R |
futile.logger | A Logging Utility for R |
futile.matrix | Random Matrix Generation and Manipulation |
futile.options | Futile Options Management |
future | Unified Parallel and Distributed Processing in R for Everyone |
future.apply | Apply Function to Elements in Parallel using Futures |
GA | Genetic Algorithms |
GAabbreviate | Abbreviating Items Measures using Genetic Algorithms |
gap | Genetic Analysis Package |
gapminder | Data from Gapminder |
gbm | Generalized Boosted Regression Models |
gcrma | Background Adjustment Using Sequence Information |
gdalUtils | Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities |
gdata | Various R Programming Tools for Data Manipulation |
gdmp | Genomic Data Management |
gdsfmt | R Interface to CoreArray Genomic Data Structure (GDS) Files |
gdtools | Utilities for Graphical Rendering |
geeM | Solve Generalized Estimating Equations |
geepack | Generalized Estimating Equation Package |
geigen | Calculate Generalized Eigenvalues |
geiger | Analysis of Evolutionary Diversification |
GenABEL | genome-wide SNP association analysis |
GenABEL.data | Package contains data which is used by GenABEL example and test functions |
gender | Predict Gender from Names Using Historical Data |
genefilter | genefilter: methods for filtering genes from high-throughput experiments |
geneplotter | Graphics related functions for Bioconductor |
GeneSelector | Stability and Aggregation of ranked gene lists |
genetics | Population Genetics |
genlasso | Path algorithm for generalized lasso problems |
GenomeInfoDb | Utilities for manipulating chromosome and other 'seqname' identifiers |
GenomeInfoDbData | Species and taxonomy ID look up tables used by GenomeInfoDb |
GenomicAlignments | Representation and manipulation of short genomic alignments |
GenomicFeatures | Tools for making and manipulating transcript centric annotations |
GenomicRanges | Representation and manipulation of genomic intervals and variables defined along a genome |
geometry | Mesh Generation and Surface Tesselation |
GEOquery | Get data from NCBI Gene Expression Omnibus (GEO) |
geosphere | Spherical Trigonometry |
getopt | C-Like 'getopt' Behavior |
GetoptLong | Parsing Command-Line Arguments and Variable Interpolation |
GGally | Extension to 'ggplot2' |
ggbio | Visualization tools for genomic data |
ggdendro | Create Dendrograms and Tree Diagrams Using 'ggplot2' |
ggjoy | Joyplots in 'ggplot2' |
ggm | Functions for graphical Markov models |
ggplot2 | Create Elegant Data Visualisations Using the Grammar of Graphics |
ggplot2movies | Movies Data |
ggpubr | 'ggplot2' Based Publication Ready Plots |
ggRandomForests | Visually Exploring Random Forests |
ggrepel | Automatically Position Non-Overlapping Text Labels with 'ggplot2' |
ggridges | Ridgeline Plots in 'ggplot2' |
ggsci | Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2' |
ggsignif | Significance Brackets for 'ggplot2' |
ggtree | an R package for visualization and annotation of phylogenetic trees with their covariates and other associated data |
ggvis | Interactive Grammar of Graphics |
GIGrvg | Random Variate Generator for the GIG Distribution |
git2r | Provides Access to Git Repositories |
glasso | Graphical lasso- estimation of Gaussian graphical models |
glm2 | Fitting Generalized Linear Models |
glmmLasso | Variable Selection for Generalized Linear Mixed Models by L1-Penalized Estimation |
glmnet | Lasso and Elastic-Net Regularized Generalized Linear Models |
GlobalOptions | Generate Functions to Get or Set Global Options |
globals | Identify Global Objects in R Expressions |
glue | Interpreted String Literals |
gmailr | Access the Gmail RESTful API |
gmodels | Various R Programming Tools for Model Fitting |
gmp | Multiple Precision Arithmetic |
GO.db | A set of annotation maps describing the entire Gene Ontology |
GOSemSim | GO-terms Semantic Similarity Measures |
gower | Gower's Distance |
GPArotation | GPA Factor Rotation |
gplots | Various R Programming Tools for Plotting Data |
graph | graph: A package to handle graph data structures |
gridBase | Integration of base and grid graphics |
gridExtra | Miscellaneous Functions for "Grid" Graphics |
gridSVG | Export 'grid' Graphics as SVG |
grplasso | Fitting user specified models with Group Lasso penalty |
grpreg | Regularization Paths for Regression Models with Grouped Covariates |
gss | General Smoothing Splines |
gstat | Spatial and Spatio-Temporal Geostatistical Modelling |
gsubfn | Utilities for Strings and Function Arguments |
gtable | Arrange 'Grobs' in Tables |
gtools | Various R Programming Tools |
GUESSFM | Using GUESS for Fine Mapping |
hashmap | The Faster Hash Map |
haven | Import and Export 'SPSS' |
hdf5r | Interface to the 'HDF5' Binary Data Format |
HDMD | Statistical Analysis Tools for High Dimension Molecular Data (HDMD) |
hexbin | Hexagonal Binning Routines |
highr | Syntax Highlighting for R Source Code |
HKprocess | Hurst-Kolmogorov Process |
Hmisc | Harrell Miscellaneous |
hms | Pretty Time of Day |
horseshoe | Implementation of the Horseshoe Prior |
hpar | Human Protein Atlas in R |
htmlTable | Advanced Tables for Markdown/HTML |
htmltools | Tools for HTML |
htmlwidgets | HTML Widgets for R |
httpcode | 'HTTP' Status Code Helper |
httpuv | HTTP and WebSocket Server Library |
httr | Tools for Working with URLs and HTTP |
huge | High-Dimensional Undirected Graph Estimation |
hunspell | High-Performance Stemmer |
hwriter | HTML Writer - Outputs R objects in HTML format |
hydroGOF | Goodness-of-Fit Functions for Comparison of Simulated and Observed Hydrological Time Series |
hydroTSM | Time Series Management |
hyperSpec | Work with Hyperspectral Data |
ica | Independent Component Analysis |
igraph | Network Analysis and Visualization |
illuminaio | Parsing Illumina Microarray Output Files |
impute | impute: Imputation for microarray data |
indicspecies | Relationship Between Species and Groups of Sites |
inline | Functions to Inline C |
intansv | Integrative analysis of structural variations |
interactiveDisplayBase | Base package for enabling powerful shiny web displays of Bioconductor objects |
intervals | Tools for Working with Points and Intervals |
IONiseR | Quality Assessment Tools for Oxford Nanopore MinION data |
IPO | Automated Optimization of XCMS Data Processing parameters |
ipred | Improved Predictors |
ipw | Estimate Inverse Probability Weights |
IRanges | Infrastructure for manipulating intervals on sequences |
IRdisplay | 'Jupyter' Display Machinery |
IRkernel | Native R Kernel for the 'Jupyter Notebook' |
irlba | Fast Truncated Singular Value Decomposition and Principal Components Analysis for Large Dense and Sparse Matrices |
itcSegment | Individual Tree Crowns Segmentation |
iterators | Provides Iterator Construct for R |
itertools | Iterator Tools |
jagsUI | A Wrapper Around 'rjags' to Streamline 'JAGS' Analyses |
jomo | Multilevel Joint Modelling Multiple Imputation |
jpeg | Read and write JPEG images |
jsonlite | A Robust |
kebabs | Kernel-Based Analysis Of Biological Sequences |
KEGG.db | A set of annotation maps for KEGG |
KEGGgraph | KEGGgraph: A graph approach to KEGG PATHWAY in R and Bioconductor |
KEGGprofile | An annotation and visualization package for multi-types and multi-groups expression data in KEGG pathway |
KEGGREST | Client-side REST access to KEGG |
keras | R Interface to 'Keras' |
kerasR | R Interface to the Keras Deep Learning Library |
kernlab | Kernel-Based Machine Learning Lab |
KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |
KFAS | Kalman Filter and Smoother for Exponential Family State Space Models |
kimisc | Kirill's Miscellaneous Functions |
kinship2 | Pedigree Functions |
klaR | Classification and Visualization |
knitr | A General-Purpose Package for Dynamic Report Generation in R |
labeling | Axis Labeling |
labelled | Manipulating Labelled Data |
lambda.r | Modeling Data with Functional Programming |
lambda.tools | Tools for Modeling Data with Functional Programming |
lars | Least Angle Regression |
lassoshooting | L1 regularized regression (Lasso) solver using the Cyclic Coordinate Descent algorithm aka Lasso Shooting |
later | Utilities for Delaying Function Execution |
lattice | Trellis Graphics for R |
latticeExtra | Extra Graphical Utilities Based on Lattice |
lava | Latent Variable Models |
lavaan | Latent Variable Analysis |
lavaan.survey | Complex Survey Structural Equation Modeling (SEM) |
lazyeval | Lazy (Non-Standard) Evaluation |
LDcorSV | Linkage Disequilibrium Corrected by the Structure and the Relatedness |
LDheatmap | Graphical Display of Pairwise Linkage Disequilibria Between SNPs |
leaflet | Create Interactive Web Maps with the JavaScript 'Leaflet' Library |
leaflet.extras | Extra Functionality for 'leaflet' Package |
leaps | Regression Subset Selection |
LearnBayes | Functions for Learning Bayesian Inference |
lfmm | Latent Factor Mixed Models |
LiblineaR | Linear Predictive Models Based on the 'LIBLINEAR' C/C++ Library |
lidR | Airborne LiDAR Data Manipulation and Visualization for Forestry Applications |
limma | Linear Models for Microarray Data |
limSolve | Solving Linear Inverse Models |
LinkedMatrix | Column-Linked and Row-Linked Matrices |
lintr | A 'Linter' for R Code |
listenv | Environments Behaving (Almost) as Lists |
lme4 | Linear Mixed-Effects Models using 'Eigen' and S4 |
lmmen | Linear Mixed Model Elastic Net |
lmmlasso | Linear mixed-effects models with Lasso |
lmtest | Testing Linear Regression Models |
locfit | Local Regression |
loo | Efficient Leave-One-Out Cross-Validation and WAIC for Bayesian Models |
lpSolve | Interface to 'Lp_solve' v. 5.5 to Solve Linear/Integer Programs |
lsgl | Linear Multiple Output Sparse Group Lasso |
lsmeans | Least-Squares Means |
ltsa | Linear Time Series Analysis |
lubridate | Make Dealing with Dates a Little Easier |
magic | Create and Investigate Magic Squares |
magrittr | A Forward-Pipe Operator for R |
MAIT | Statistical Analysis of Metabolomic Data |
MALDIquant | Quantitative Analysis of Mass Spectrometry Data |
manipulate | Interactive Plots for RStudio |
manipulateWidget | Add Even More Interactivity to Interactive Charts |
mapdata | Extra Map Databases |
mapedit | Interactive Editing of Spatial Data in R |
mapproj | Map Projections |
maps | Draw Geographical Maps |
maptools | Tools for Reading and Handling Spatial Objects |
mapview | Interactive Viewing of Spatial Data in R |
markdown | 'Markdown' Rendering for R |
MARSS | Multivariate Autoregressive State-Space Modeling |
MASS | Support Functions and Datasets for Venables and Ripley's MASS |
MassSpecWavelet | Mass spectrum processing by wavelet-based algorithms |
Matrix | Sparse and Dense Matrix Classes and Methods |
matrixcalc | Collection of functions for matrix calculations |
MatrixModels | Modelling with Sparse And Dense Matrices |
matrixStats | Functions that Apply to Rows and Columns of Matrices (and to Vectors) |
MaxentVariableSelection | Selecting the Best Set of Relevant Environmental Variables along with the Optimal Regularization Multiplier for Maxent Niche Modeling |
mclust | Gaussian Mixture Modelling for Model-Based Clustering |
mcmc | Markov Chain Monte Carlo |
MCMCpack | Markov Chain Monte Carlo (MCMC) Package |
mcmcplots | Create Plots from MCMC Output |
mda | Mixture and Flexible Discriminant Analysis |
mdatools | Multivariate Data Analysis for Chemometrics |
memoise | Memoisation of Functions |
memuse | Memory Estimation Utilities |
MESS | Miscellaneous Esoteric Statistical Scripts |
metabolomics | Analysis of Metabolomics Data |
MetaboSignal | MetaboSignal: a network-based approach to overlay and explore metabolic and signaling KEGG pathways |
metap | Meta-Analysis of Significance Values |
methylKit | DNA methylation analysis from high-throughput bisulfite sequencing results |
methylumi | Handle Illumina methylation data |
Metrics | Evaluation Metrics for Machine Learning |
mgcv | Mixed GAM Computation Vehicle with Automatic Smoothness Estimation |
mice | Multivariate Imputation by Chained Equations |
micropan | Microbial Pan-Genome Analysis |
microseq | Basic Biological Sequence Handling |
mime | Map Filenames to MIME Types |
minfi | Analyze Illumina Infinium DNA methylation arrays |
miniUI | Shiny UI Widgets for Small Screens |
minpack.lm | R Interface to the Levenberg-Marquardt Nonlinear Least-Squares Algorithm Found in MINPACK |
minqa | Derivative-free optimization algorithms by quadratic approximation |
mirt | Multidimensional Item Response Theory |
misc3d | Miscellaneous 3D Plots |
miscTools | Miscellaneous Tools and Utilities |
missForest | Nonparametric Missing Value Imputation using Random Forest |
mitml | Tools for Multiple Imputation in Multilevel Modeling |
mitools | Tools for multiple imputation of missing data |
mixOmics | Omics Data Integration Project |
mixtools | Tools for Analyzing Finite Mixture Models |
mlbench | Machine Learning Benchmark Problems |
mnormt | The Multivariate Normal and t Distributions |
ModelMetrics | Rapid Calculation of Model Metrics |
modelr | Modelling Functions that Work with the Pipe |
modeltools | Tools and Classes for Statistical Models |
mpm | Multivariate Projection Methods |
mpoly | Symbolic Computation and More with Multivariate Polynomials |
msm | Multi-State Markov and Hidden Markov Models in Continuous Time |
MSnbase | Base Functions and Classes for Mass Spectrometry and Proteomics |
MTS | All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models |
multcomp | Simultaneous Inference in General Parametric Models |
multispatialCCM | Multispatial Convergent Cross Mapping |
multiwayvcov | Multi-Way Standard Error Clustering |
multtest | Resampling-based multiple hypothesis testing |
munsell | Utilities for Using Munsell Colours |
mvtnorm | Multivariate Normal and t Distributions |
MWASTools | MWASTools: an integrated pipeline to perform metabolome-wide association studies |
mygene | Access MyGene.Info_ services |
mzID | An mzIdentML parser for R |
mzR | parser for netCDF |
NADA | Nondetects and Data Analysis for Environmental Data |
natserv | 'NatureServe' Interface |
ncbit | retrieve and build NBCI taxonomic data |
ncvreg | Regularization Paths for SCAD and MCP Penalized Regression Models |
neldermead | R Port of the 'Scilab' Neldermead Module |
network | Classes for Relational Data |
neuralnet | Training of Neural Networks |
nleqslv | Solve Systems of Nonlinear Equations |
nlme | Linear and Nonlinear Mixed Effects Models |
nloptr | R interface to NLopt |
NLP | Natural Language Processing Infrastructure |
NMF | Algorithms and Framework for Nonnegative Matrix Factorization (NMF) |
nnet | Feed-Forward Neural Networks and Multinomial Log-Linear Models |
NOISeq | Exploratory analysis and differential expression for RNA-seq data |
nor1mix | Normal (1-d) Mixture Models (S3 Classes and Methods) |
np | Nonparametric Kernel Smoothing Methods for Mixed Data Types |
numDeriv | Accurate Numerical Derivatives |
oligo | Preprocessing tools for oligonucleotide arrays |
oligoClasses | Classes for high-throughput arrays supported by oligo and crlmm |
openNLP | Apache OpenNLP Tools Interface |
openNLPdata | Apache OpenNLP Jars and Basic English Language Models |
openssl | Toolkit for Encryption |
openxlsx | Read |
optextras | Tools to Support Optimization Possibly with Bounds and Masks |
optimbase | R port of the Scilab optimbase module |
optimsimplex | R Port of the 'Scilab' Optimsimplex Module |
optimx | A Replacement and Extension of the optim() Function |
optparse | Command Line Option Parser |
ordinal | Regression Models for Ordinal Data |
ordinationDuality | Performs orthogonal decomposition |
OrganismDbi | Software to enable the smooth interfacing of different database packages |
org.Hs.eg.db | Genome wide annotation for Human |
orthopolynom | Collection of functions for orthogonal and orthonormal polynomials |
packrat | A Dependency Management System for Projects and their R Package Dependencies |
pamr | Pam: prediction analysis for microarrays |
pan | Multiple Imputation for Multivariate Panel or Clustered Data |
parallelDist | Parallel Distance Matrix Computation using Multiple Threads |
partitions | Additive Partitions of Integers |
pbapply | Adding Progress Bar to '*apply' Functions |
pbdZMQ | Programming with Big Data -- Interface to 'ZeroMQ' |
pbivnorm | Vectorized Bivariate Normal CDF |
pbkrtest | Parametric Bootstrap and Kenward Roger Based Methods for Mixed Model Comparison |
pbmcapply | Tracking the Progress of Mc*pply with Progress Bar |
pcalg | Methods for Graphical Models and Causal Inference |
pcaMethods | A collection of PCA methods |
pcaPP | Robust PCA by Projection Pursuit |
pegas | Population and Evolutionary Genetics Analysis System |
penalized | L1 (Lasso and Fused Lasso) and L2 (Ridge) Penalized Estimation in GLMs and in the Cox Model |
PerformanceAnalytics | Econometric Tools for Performance and Risk Analysis |
permute | Functions for Generating Restricted Permutations of Data |
phangorn | Phylogenetic Reconstruction and Analysis |
pheatmap | Pretty Heatmaps |
phylobase | Base Package for Phylogenetic Structures and Comparative Data |
phylolm | Phylogenetic Linear Regression |
phylomap | Phylogenetic Stochastic Mapping |
phyloseq | Handling and analysis of high-throughput microbiome census data |
phytools | Phylogenetic Tools for Comparative Biology (and Other Things) |
picasso | Pathwise Calibrated Sparse Shooting Algorithm |
pillar | Coloured Formatting for Columns |
pinfsc50 | Sequence ('FASTA') |
pixmap | Bitmap Images (``Pixel Maps) |
pkgconfig | Private Configuration for 'R' Packages |
pkgmaker | Development Utilities for R Packages |
PKI | Public Key Infrastucture for R Based on the X.509 Standard |
plogr | The 'plog' C++ Logging Library |
plot3D | Plotting Multi-Dimensional Data |
plotly | Create Interactive Web Graphics via 'plotly.js' |
plotmo | Plot a Model's Residuals |
plotrix | Various Plotting Functions |
pls | Partial Least Squares and Principal Component Regression |
plsgenomics | PLS Analyses for Genomics |
plsRglm | Partial Least Squares Regression for Generalized Linear Models |
plyr | Tools for Splitting |
png | Read and write PNG images |
polynom | A Collection of Functions to Implement a Class for Univariate Polynomial Manipulations |
PopGenome | An Efficient Swiss Army Knife for Population Genomic Analyses |
pophelper | Tabulate |
poRe | An R package to enable organisation and visualisation of nanopore sequencing data |
poweRlaw | Analysis of Heavy Tailed Distributions |
ppcor | Partial and Semi-Partial (Part) Correlation |
prabclus | Functions for Clustering of Presence-Absence |
pracma | Practical Numerical Math Functions |
praise | Praise Users |
preprocessCore | A collection of pre-processing functions |
PresenceAbsence | Presence-Absence Model Evaluation. |
prettyunits | Pretty |
pROC | Display and Analyze ROC Curves |
processx | Execute and Control System Processes |
prodlim | Product-Limit Estimation for Censored Event History Analysis |
progress | Terminal Progress Bars |
proj4 | A simple interface to the PROJ.4 cartographic projections library |
promises | Abstractions for Promise-Based Asynchronous Programming |
propr | Calculating Proportionality Between Vectors of Compositional Data |
ProtGenerics | S4 generic functions for Bioconductor proteomics infrastructure |
proto | Prototype Object-Based Programming |
proxy | Distance and Similarity Measures |
pryr | Tools for Computing on the Language |
pscl | Political Science Computational Laboratory |
psych | Procedures for Psychological |
purrr | Functional Programming Tools |
purrrlyr | Tools at the Intersection of 'purrr' and 'dplyr' |
qdap | Bridging the Gap Between Qualitative Data and Quantitative Analysis |
qdapDictionaries | Dictionaries and Word Lists for the 'qdap' Package |
qdapRegex | Regular Expression Removal |
qdapTools | Tools for the 'qdap' Package |
qpcR | Modelling and Analysis of Real-Time PCR Data |
qqman | Q-Q and Manhattan Plots for GWAS Data |
qtl | Tools for Analyzing QTL Experiments |
quadprog | Functions to solve Quadratic Programming Problems. |
quantmod | Quantitative Financial Modelling Framework |
quantreg | Quantile Regression |
questionr | Functions to Make Surveys Processing Easier |
qvalue | Q-value estimation for false discovery rate control |
R2admb | 'ADMB' to R Interface Functions |
R2GUESS | Wrapper Functions for GUESS |
R2HTML | HTML Exportation for R Objects |
R2jags | Using R to Run 'JAGS' |
R2WinBUGS | Running 'WinBUGS' and 'OpenBUGS' from 'R' / 'S-PLUS' |
R6 | Classes with Reference Semantics |
radiator | RADseq Data Exploration |
RandomFields | Simulation and Analysis of Random Fields |
RandomFieldsUtils | Utilities for the Simulation and Analysis of Random Fields |
randomForest | Breiman and Cutler's Random Forests for Classification and Regression |
randomForestSRC | Random Forests for Survival |
randtoolbox | Toolbox for Pseudo and Quasi Random Number Generation and RNG Tests |
ranger | A Fast Implementation of Random Forests |
RANN | Fast Nearest Neighbour Search (Wraps ANN Library) Using L2 Metric |
rARPACK | Solvers for Large Scale Eigenvalue and SVD Problems |
raster | Geographic Data Analysis and Modeling |
rasterVis | Visualization Methods for Raster Data |
R.basic | [R] Class Library - Stand-alone basic functions [DEPRECATED] |
RBGL | An interface to the BOOST graph library |
Rcgmin | Conjugate Gradient Minimization of Nonlinear Functions |
RColorBrewer | ColorBrewer Palettes |
Rcpp | Seamless R and C++ Integration |
RcppArmadillo | 'Rcpp' Integration for the 'Armadillo' Templated Linear Algebra Library |
RcppEigen | 'Rcpp' Integration for the 'Eigen' Templated Linear Algebra Library |
RcppGSL | 'Rcpp' Integration for 'GNU GSL' Vectors and Matrices |
RcppParallel | Parallel Programming Tools for 'Rcpp' |
RcppProgress | An Interruptible Progress Bar with OpenMP Support for C++ in R Packages |
RcppRoll | Efficient Rolling / Windowed Operations |
RcppZiggurat | 'Rcpp' Integration of Different "Ziggurat" Normal RNG Implementations |
RCurl | General Network (HTTP/FTP/...) Client Interface for R |
rda | Shrunken Centroids Regularized Discriminant Analysis |
R.devices | Unified Handling of Graphics Devices |
readr | Read Rectangular Text Data |
readxl | Read Excel Files |
recipes | Preprocessing Tools to Create Design Matrices |
registry | Infrastructure for R Package Registries |
regress | Gaussian Linear Models with Linear Covariance Structure |
rematch | Match Regular Expressions with a Nicer 'API' |
rentrez | 'Entrez' in R |
reports | Assist the Workflow of Writing Academic Articles and Other Reports |
repr | Serializable Representations |
reprex | Prepare Reproducible Example Code via the Clipboard |
reshape | Flexibly Reshape Data |
reshape2 | Flexibly Reshape Data: A Reboot of the Reshape Package |
ResourceSelection | Resource Selection (Probability) Functions for Use-Availability Data |
reticulate | Interface to 'Python' |
rex | Friendly Regular Expressions |
rexpokit | R Wrappers for EXPOKIT; Other Matrix Functions |
rgdal | Bindings for the 'Geospatial' Data Abstraction Library |
rgeos | Interface to Geometry Engine - Open Source ('GEOS') |
rgl | 3D Visualization Using OpenGL |
Rgraphviz | Provides plotting capabilities for R graph objects |
rhdf5 | HDF5 interface to R |
rhierbaps | rhierbaps |
RhpcBLASctl | Control the Number of Threads on 'BLAS' |
Rhtslib | HTSlib high-throughput sequencing library as an R package |
RInside | C++ Classes to Embed R in C++ Applications |
rio | A Swiss-Army Knife for Data I/O |
ritis | Integrated Taxonomic Information System Client |
rjags | Bayesian Graphical Models using MCMC |
rJava | Low-Level R to Java Interface |
rjson | JSON for R |
RJSONIO | Serialize R objects to JSON |
rlang | Functions for Base Types and Core R and 'Tidyverse' Features |
rlas | Read and Write 'las' and 'laz' Binary File Formats Used for Remote Sensing Data |
rlecuyer | R Interface to RNG with Multiple Streams |
rmarkdown | Dynamic Documents for R |
R.methodsS3 | S3 Methods Simplified |
Rmisc | Rmisc: Ryan Miscellaneous |
RMTstat | Distributions |
RMySQL | Database Interface and 'MySQL' Driver for R |
RnBeads | RnBeads |
rncl | An Interface to the Nexus Class Library |
RNeXML | Semantically Rich I/O for the 'NeXML' Format |
rngtools | Utility Functions for Working with Random Number Generators |
rngWELL | Toolbox for WELL Random Number Generators |
robust | Port of the S+ "Robust Library" |
robustbase | Basic Robust Statistics |
ROC | utilities for ROC |
ROCR | Visualizing the Performance of Scoring Classifiers |
R.oo | R Object-Oriented Programming with or without References |
rotl | Interface to the 'Open Tree of Life' API |
roxygen2 | In-Line Documentation for R |
rpart | Recursive Partitioning and Regression Trees |
RPMM | Recursively Partitioned Mixture Model |
RPostgreSQL | R Interface to the 'PostgreSQL' Database System |
rprojroot | Finding Files in Project Subdirectories |
rrBLUP | Ridge Regression and Other Kernels for Genomic Selection |
rrcov | Scalable Robust Estimators with High Breakdown Point |
rredlist | 'IUCN' Red List Client |
rrpack | Reduced-Rank Regression |
Rsamtools | Binary alignment (BAM) |
rsconnect | Deployment Interface for R Markdown Documents and Shiny Applications |
RSkittleBrewer | Fun with R Colors |
rslurm | Submit R Calculations to a Slurm Cluster |
rsm | Response-Surface Analysis |
Rsolnp | General Non-Linear Optimization |
RSpectra | Solvers for Large-Scale Eigenvalue and SVD Problems |
RSQLite | 'SQLite' Interface for R |
rstan | R Interface to Stan |
rstanarm | Bayesian Applied Regression Modeling via Stan |
rstantools | Tools for Developing R Packages Interfacing with 'Stan' |
rstudioapi | Safely Access the RStudio API |
Rsubread | Subread sequence alignment for R |
rtracklayer | R interface to genome annotation files and the UCSC genome browser |
Rtsne | T-Distributed Stochastic Neighbor Embedding using a Barnes-Hut Implementation |
RUnit | R Unit Test Framework |
R.utils | Various Programming Utilities |
ruv | Detect and Remove Unwanted Variation using Negative Controls |
rvcheck | R/Package Version Check |
rversions | Query 'R' Versions |
rvest | Easily Harvest (Scrape) Web Pages |
Rvmmin | Variable Metric Nonlinear Function Minimization |
rworldmap | Mapping Global Data |
S4Vectors | S4 implementation of vector-like and list-like objects |
SALES | Elastic Net and (Adaptive) Lasso Penalized Sparse Asymmetric Least Squares (SALES) and Coupled Sparse Asymmetric Least Squares (COSALES) using Coordinate Descent and Proximal Gradient Algorithms |
samr | SAM: Significance Analysis of Microarrays |
sandwich | Robust Covariance Matrix Estimators |
satellite | Handling and Manipulating Remote Sensing Data |
scales | Scale Functions for Visualization |
scatterplot3d | 3D Scatter Plot |
scoringRules | Scoring Rules for Parametric and Simulated Distribution Forecasts |
SDMTools | Species Distribution Modelling Tools: Tools for processing data associated with species distribution modelling exercises |
seegSDM | Streamlined Functions for Species Distribution Modelling in the SEEG Research Group |
segmented | Regression Models with Break-Points / Change-Points Estimation |
selectr | Translate CSS Selectors to XPath Expressions |
sensitivity | Global Sensitivity Analysis of Model Outputs |
seqinr | Biological Sequences Retrieval and Analysis |
setRNG | Set (Normal) Random Number Generator and Seed |
settings | Software Option Settings Manager for R |
Seurat | Tools for Single Cell Genomics |
sf | Simple Features for R |
sfsmisc | Utilities from 'Seminar fuer Statistik' ETH Zurich |
sglOptim | Generic Sparse Group Lasso Solver |
shape | Functions for Plotting Graphical Shapes |
shiny | Web Application Framework for R |
shinyjs | Easily Improve the User Experience of Your Shiny Apps in Seconds |
shinystan | Interactive Visual and Numerical Diagnostics and Posterior Analysis for Bayesian Models |
shinythemes | Themes for Shiny |
ShortRead | FASTQ input and manipulation |
siggenes | Multiple testing using SAM and Efron's empirical Bayes approaches |
SimCorMultRes | Simulates Correlated Multinomial Responses |
SKAT | SNP-Set (Sequence) Kernel Association Test |
slam | Sparse Lightweight Arrays and Matrices |
sleuth | Tools for investigating RNA-Seq |
sn | The Skew-Normal and Related Distributions Such as the Skew-t |
sna | Tools for Social Network Analysis |
snow | Simple Network of Workstations |
snowfall | Easier cluster computing (based on snow). |
snpReady | Preparing Genotypic Datasets in Order to Run Genomic Analysis |
SNPRelate | Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data |
snpStats | SnpMatrix and XSnpMatrix classes and methods |
solrium | General Purpose R Interface to 'Solr' |
sommer | Solving Mixed Model Equations in R |
sourcetools | Tools for Reading |
sp | Classes and Methods for Spatial Data |
spacetime | Classes and Methods for Spatio-Temporal Data |
spam | SPArse Matrix |
sparsebn | Learning Sparse Bayesian Networks from High-Dimensional Data |
sparsebnUtils | Utilities for Learning Sparse Bayesian Networks |
SparseM | Sparse Linear Algebra |
sparsevar | A Package for Sparse VAR/VECM Estimation |
spatial | Functions for Kriging and Point Pattern Analysis |
SpatioTemporal | Spatio-Temporal Model Estimation |
spData | Datasets for Spatial Analysis |
spDataLarge | Large datasets for spatial analysis |
spdep | Spatial Dependence: Weighting Schemes |
speedglm | Fitting Linear and Generalized Linear Models to Large Data Sets |
SpiecEasi | Sparse Inverse Covariance for Ecological Statistical Inference |
splancs | Spatial and Space-Time Point Pattern Analysis |
splitstackshape | Stack and Reshape Datasets After Splitting Concatenated Values |
spls | Sparse Partial Least Squares (SPLS) Regression and Classification |
sqldf | Manipulate R Data Frames Using SQL |
SQUAREM | Squared Extrapolation Methods for Accelerating EM-Like Monotone Algorithms |
stabledist | Stable Distribution Functions |
StanHeaders | C++ Header Files for Stan |
statip | Statistical Functions for Probability Distributions |
statmod | Statistical Modeling |
statnet.common | Common R Scripts and Utilities Used by the Statnet Project Software |
stringdist | Approximate String Matching and String Distance Functions |
stringi | Character String Processing Facilities |
stringr | Simple |
strucchange | Testing |
subplex | Unconstrained Optimization using the Subplex Algorithm |
SummarizedExperiment | SummarizedExperiment container |
survey | Analysis of Complex Survey Samples |
survival | Survival Analysis |
sva | Surrogate Variable Analysis |
svDialogs | 'SciViews' - Standard Dialog Boxes for Windows |
SVGAnnotation | Tools for post-processing SVG plots created in R |
svglite | An 'SVG' Graphics Device |
svGUI | SciViews - Manage GUIs in R |
svUnit | SciViews GUI API - Unit testing |
symDMatrix | Partitioned Symmetric Matrices |
synbreed | Framework for the Analysis of Genomic Prediction Data using R |
targetSeqView | View alignments over candidate structural variant loci |
tawny | Clean Covariance Matrices Using Random Matrix Theory and Shrinkage Estimators for Portfolio Optimization |
tawny.types | Common Types for Tawny |
taxize | Taxonomic Information from Around the Web |
tclust | Robust Trimmed Clustering |
TeachingDemos | Demonstrations for Teaching and Learning |
tensorA | Advanced tensors arithmetic with named indices |
tensorflow | R Interface to 'TensorFlow' |
testthat | Unit Testing for R |
tfruns | Training Run Tools for 'TensorFlow' |
TH.data | TH's Data Archive |
threejs | Interactive 3D Scatter Plots |
tibble | Simple Data Frames |
tidyr | Easily Tidy Data with 'spread()' and 'gather()' Functions |
tidyselect | Select from a Set of Strings |
tidyverse | Easily Install and Load the 'Tidyverse' |
tiff | Read and write TIFF images |
timeDate | Rmetrics - Chronological and Calendar Objects |
timeSeries | Rmetrics - Financial Time Series Objects |
tinytex | Helper Functions to Install and Maintain 'TeX Live' |
tm | Text Mining Package |
treeio | Base Classes and Functions for Phylogenetic Tree Input and Output |
triebeard | 'Radix' Trees in 'Rcpp' |
trimcluster | Cluster analysis with trimming |
truncnorm | Truncated Normal Distribution |
tseries | Time Series Analysis and Computational Finance |
tseriesChaos | Analysis of nonlinear time series |
tsne | T-Distributed Stochastic Neighbor Embedding for R (t-SNE) |
TTR | Technical Trading Rules |
twang | Toolkit for Weighting and Analysis of Nonequivalent Groups |
TxDb.Hsapiens.UCSC.hg19.knownGene | Annotation package for TxDb object(s) |
ucminf | General-Purpose Unconstrained Non-Linear Optimization |
udunits2 | Udunits-2 Bindings for R |
units | Measurement Units for R Vectors |
UpSetR | A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets |
urca | Unit Root and Cointegration Tests for Time Series Data |
urltools | Vectorised Tools for URL Handling and Parsing |
uroot | Unit Root Tests for Seasonal Time Series |
utf8 | Unicode Text Processing |
uuid | Tools for generating and handling of UUIDs |
V8 | Embedded JavaScript Engine for R |
VariantAnnotation | Annotation of Genetic Variants |
vars | VAR Modelling |
varSelRF | Variable Selection using Random Forests |
vcd | Visualizing Categorical Data |
vcfR | Manipulate and Visualize VCF Data |
vegan | Community Ecology Package |
VEGAWES | A package to perform vartiational-based copy number segmentation on WES data |
VennDiagram | Generate High-Resolution Venn and Euler Plots |
venneuler | Venn and Euler Diagrams |
VGAM | Vector Generalized Linear and Additive Models |
viridis | Default Color Maps from 'matplotlib' |
viridisLite | Default Color Maps from 'matplotlib' (Lite Version) |
vsn | Variance stabilization and calibration for microarray data |
wavelets | A package of functions for computing wavelet filters |
waveslim | Basic wavelet routines for one- |
wavethresh | Wavelets Statistics and Transforms |
wbs | Wild Binary Segmentation for Multiple Change-Point Detection |
webshot | Take Screenshots of Web Pages |
WGCNA | Weighted Correlation Network Analysis |
whisker | {{mustache}} for R |
WikidataR | API Client Library for 'Wikidata' |
WikipediR | A MediaWiki API Wrapper |
wikitaxa | Taxonomic Information from 'Wikipedia' |
withr | Run Code 'With' Temporarily Modified Global State |
wordcloud | Word Clouds |
worrms | World Register of Marine Species (WoRMS) Client |
xcms | LC/MS and GC/MS Data Analysis |
xgboost | Extreme Gradient Boosting |
xlsx | Read |
xlsxjars | Package required POI jars for the xlsx package |
XML | Tools for Parsing and Generating XML Within R and S-Plus |
xml2 | Parse XML |
xtable | Export Tables to LaTeX or HTML |
xts | eXtensible Time Series |
XVector | Representation and manipulation of external sequences |
yaml | Methods to Convert R Data to YAML and Back |
zCompositions | Treatment of Zeros and Nondetects in Compositional Data Sets |
zeallot | Multiple |
zip | Cross-Platform 'zip' Compression |
zlibbioc | An R packaged zlib-1.2.5 |
zoo | S3 Infrastructure for Regular and Irregular Time Series (Z's Ordered Observations) |
base | The R Base Package |
boot | Bootstrap Functions (Originally by Angelo Canty for S) |
class | Functions for Classification |
cluster | Finding Groups in Data: Cluster Analysis Extended Rousseeuw et al. |
codetools | Code Analysis Tools for R |
compiler | The R Compiler Package |
datasets | The R Datasets Package |
foreign | Read Data Stored by 'Minitab' |
graphics | The R Graphics Package |
grDevices | The R Graphics Devices and Support for Colours and Fonts |
grid | The Grid Graphics Package |
KernSmooth | Functions for Kernel Smoothing Supporting Wand & Jones (1995) |
lattice | Trellis Graphics for R |
MASS | Support Functions and Datasets for Venables and Ripley's MASS |
Matrix | Sparse and Dense Matrix Classes and Methods |
methods | Formal Methods and Classes |
mgcv | Mixed GAM Computation Vehicle with Automatic Smoothness Estimation |
nlme | Linear and Nonlinear Mixed Effects Models |
nnet | Feed-Forward Neural Networks and Multinomial Log-Linear Models |
parallel | Support for Parallel computation in R |
rpart | Recursive Partitioning and Regression Trees |
spatial | Functions for Kriging and Point Pattern Analysis |
splines | Regression Spline Functions and Classes |
stats | The R Stats Package |
stats4 | Statistical Functions using S4 Classes |
survival | Survival Analysis |
tcltk | Tcl/Tk Interface |
tools | Tools for Package Development |
utils | The R Utils Package |